Maybe the funky periods are caused by the trauma your body went thru with the surgery. Maybe within time things will get back to normal. Sorry I couldn't be of more help.
Been living with Crohn's Disease for 33 years. Currently on Asacol, Prilosec, Estrace, Prinivil, Diltiazem, Percoset prn for pain, Zofran, Phenergan, Probiotics, and Calcium. Resections in 2002 and 2005. Also diagnosed with Fibromyalgia and Osteoarthritis. Currently my Crohns is in remission.