Mine sure did - it was kind of odd too, after having had them for so long! But I literally had no symptoms once I healed, until my adrenals crashed and then the rest happened.
Twitching can happen for a number of reasons, so it depends on what's causing them. As I said, for me, it took being on the right form of magnesium, so shortly after I started the mag that I needed, the twitching rarely happens, unless I over do things.
If the only reason your muscles are twitching is because of these infections, it's likely nerves misfiring, and that "should" be able to be controlled (or at least lowered) with detoxing and nerve support, as well as treatment of course.
I do want to clarify the phrase 'end of remission' (maybe I'm just not awake???) - that's when we are done with treatments, and have relapsed. Relapsing of course, brings with it possibly all kinds of symptoms.
Muscle twitching can occur at any time during the infections, or during herxing. If it's during herxing, it will generally lower down once the herxing is over.
Herb only treatment for Lyme & Bart ended 12/11 - no active symptoms for 2 yrs -Herb only treatment for Babesia ended 12/12www.healingwell.com/community/default.aspx?f=30&m=2977364
Had Lyme, Bart, Babs, RMSF, Ehrlichia, Myco, Anaplasmosis, EBV
New Lyme case 8/2014 - Healed 1/31/15 - unknowingly had Asymptomatic Babs and Asymptomatic Bart, being treated now though (2/2016)