Increased fatigue, aches, these are signs of herx symptoms for me (and for many others too). Your doc and Pirouette give good advice, feel free to ease up, take a breather or slow the pacing down if things start to be too much. It's a marathon
That's great that your symptoms eased up when you took a break from the antimicrobials. It's a helpful clue that what you are experiencing is likely a herx response.