Topamax and Crohn's

I have migraines and crohn's disease. I was having a two year remisssion from my crohn's when my migraines started getting unbearable.  My doctor put me on 50 mg topamax a day , which was great for the migraines, but 2 weeks after being on topamax, I started a flare-up of my crohn's disease.  At first, I didn't connect the two , but after taking both prednisone for several weeks and having a remicade treatment, I can't stop the flare-up and I am starting to think it's the topamax.  Did anyone ever experience anything similar or does anyone have both illnesses?  I would appreciate any help on this because I don't want to give up topamax but I want to get rid of my crohn's.

I actually use elavil for my migraines it works bery well.  They tried to switch me to topomax and it caused me to have suicidal thoughts.  I immediately stoppd the topomax and called my Dr he had me just go back to how it was before with the elavil.

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Dx with Crohn's 1987, symptoms as early as 1984. Ovarian cysts dx 1994, migraines dx 1996, allergies (including food allergies) , oral allergy syndrome (sligtly different than true food allergies), Astham dx 1984, Gall Bladder removed 1999, Inguenal hernia Sx 1987

Entocort 9mg, Pentasa 2.5 g, Remicade every 8 weeks, miralax, metamucil capsules, Elavil 100 mg, Zanaflex 4 mg, asmanex, singulair, foltix, probiotics

As needed: Albuterol inhaler, relpax, nebulizer (albuterol ), have an Epi-pen but hope I never have to use one.